Comparing Pf1N1B4_596 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_596 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 13 hits to proteins with known functional sites (download)
5dvjA Crystal structure of galactose complexed periplasmic glucose binding protein (ppgbp) from p. Putida csv86 (see paper)
70% identity, 93% coverage: 33:435/435 of query aligns to 3:396/396 of 5dvjA
5dviA High resolution crystal structure of glucose complexed periplasmic glucose binding protein (ppgbp) from p. Putida csv86 (see paper)
70% identity, 93% coverage: 33:435/435 of query aligns to 3:396/396 of 5dviA
8hqqA Crystal structure of the glucose-binding protein sar11_0769 from "candidatus pelagibacter ubique" htcc1062 bound to glucose
49% identity, 87% coverage: 36:414/435 of query aligns to 6:378/398 of 8hqqA
4r2bA Crystal structure of sugar transporter oant_3817 from ochrobactrum anthropi, target efi-510528, with bound glucose
46% identity, 93% coverage: 32:435/435 of query aligns to 4:395/395 of 4r2bA
2b3fA Thermus thermophilus glucose/galactose binding protein bound with galactose (see paper)
28% identity, 88% coverage: 35:417/435 of query aligns to 3:372/392 of 2b3fA
2b3bC Thermus thermophilus glucose/galactose binding protein with bound glucose (see paper)
28% identity, 88% coverage: 35:417/435 of query aligns to 3:372/392 of 2b3bC
2b3bA Thermus thermophilus glucose/galactose binding protein with bound glucose (see paper)
28% identity, 88% coverage: 35:417/435 of query aligns to 3:372/392 of 2b3bA
4c1tA Structure of the xylo-oligosaccharide specific solute binding protein from bifidobacterium animalis subsp. Lactis bl-04 in complex with arabinoxylotriose (see paper)
31% identity, 35% coverage: 128:278/435 of query aligns to 84:248/396 of 4c1tA
Sites not aligning to the query:
7ehqA Chitin oligosaccharide binding protein (see paper)
28% identity, 46% coverage: 81:281/435 of query aligns to 55:254/406 of 7ehqA
Sites not aligning to the query:
3oo6A Crystal structures and biochemical characterization of the bacterial solute receptor acbh reveal an unprecedented exclusive substrate preference for b-d-galactopyranose (see paper)
26% identity, 50% coverage: 83:298/435 of query aligns to 50:260/390 of 3oo6A
Sites not aligning to the query:
7c0kB Crystal structure of a dinucleotide-binding protein of abc transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (form ii) (see paper)
25% identity, 77% coverage: 28:361/435 of query aligns to 12:326/397 of 7c0kB
Sites not aligning to the query:
7c0oB Crystal structure of a dinucleotide-binding protein (y56f) of abc transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (see paper)
25% identity, 77% coverage: 28:361/435 of query aligns to 11:325/397 of 7c0oB
Sites not aligning to the query:
7c0kA Crystal structure of a dinucleotide-binding protein of abc transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (form ii) (see paper)
25% identity, 77% coverage: 28:361/435 of query aligns to 11:325/396 of 7c0kA
Sites not aligning to the query:
>Pf1N1B4_596 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_596
MNAISRLATVISLASLLPVAAFPVSALAADAKGSVEVVHWWTSGGEKAAVDVLKAQVEKD
GFTWKDGAVAGGGGSTAMTVLKSRAVAGNPPGVAQIKGPDIQEWGSTGLLSTDTLKEVSK
SEGWDNLLIKKVSDTVKYEGDYVAVPVNIHRVNWLWINPEVFKKAGIDKAPTTLEEFYAA
GDKLKAAGFIALAHGGQPWQDSTVFEDVVLSVMGADGYKKALVDLDQKTLSGPEMAKAFT
ELKKVTGYMDPNRAGRDWNIAAADVINGKAGMQMMGDWAKSEWTAAKKVAGKDYQCVPFP
GTEKAFTYNIDSMAVFKLKADRKGDIAAQQDLAKVALGKDFQKVFSINKGSIPVRTDMLN
DMSGLGFDACAQASAKDFLADEKTGGLQPSMAHNMATSLAVQGAIFDVVTNFMNDKNADP
AKASAQLASAVKAAQ
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory