Comparing Pf6N2E2_1813 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1813 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
Q8RDH4 Dipeptide transport ATP-binding protein DppD; EC 7.4.2.9 from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis) (see paper)
38% identity, 96% coverage: 5:319/329 of query aligns to 3:321/326 of Q8RDH4
4fwiB Crystal structure of the nucleotide-binding domain of a dipeptide abc transporter (see paper)
39% identity, 96% coverage: 5:319/329 of query aligns to 2:310/310 of 4fwiB
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
41% identity, 76% coverage: 18:267/329 of query aligns to 7:251/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
41% identity, 76% coverage: 18:267/329 of query aligns to 8:252/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
41% identity, 76% coverage: 18:267/329 of query aligns to 8:252/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
41% identity, 76% coverage: 18:267/329 of query aligns to 8:252/344 of 6cvlD
P0AAH4 Putrescine export system ATP-binding protein SapD from Escherichia coli (strain K12) (see paper)
34% identity, 88% coverage: 9:297/329 of query aligns to 3:305/330 of P0AAH4
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
36% identity, 71% coverage: 23:257/329 of query aligns to 8:240/240 of 4ymuJ
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
37% identity, 69% coverage: 30:257/329 of query aligns to 17:248/253 of 7z15I
Sites not aligning to the query:
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
37% identity, 69% coverage: 30:257/329 of query aligns to 17:248/250 of 7z18I
Sites not aligning to the query:
7z16I E. Coli c-p lyase bound to phnk/phnl dual abc dimer with amppnp and phnk e171q mutation (see paper)
37% identity, 69% coverage: 30:257/329 of query aligns to 17:248/250 of 7z16I
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
39% identity, 72% coverage: 22:257/329 of query aligns to 11:240/241 of 4u00A
3c4jA Abc protein artp in complex with atp-gamma-s
37% identity, 71% coverage: 24:257/329 of query aligns to 11:242/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
37% identity, 71% coverage: 24:257/329 of query aligns to 11:242/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
37% identity, 71% coverage: 24:257/329 of query aligns to 11:242/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
37% identity, 71% coverage: 24:257/329 of query aligns to 11:242/242 of 2oljA
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
33% identity, 71% coverage: 22:255/329 of query aligns to 32:265/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
33% identity, 71% coverage: 22:255/329 of query aligns to 32:265/382 of 7aheC
Sites not aligning to the query:
2d62A Crystal structure of multiple sugar binding transport atp- binding protein
31% identity, 75% coverage: 23:270/329 of query aligns to 13:268/375 of 2d62A
P9WQI3 Trehalose import ATP-binding protein SugC; MtbSugC; Nucleotide-binding domain of SugABC transporter; NBD of SugABC transporter; SugABC transporter ATPase SugC; EC 7.5.2.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
35% identity, 68% coverage: 31:255/329 of query aligns to 19:237/393 of P9WQI3
>Pf6N2E2_1813 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1813
MKKDIALELCDIRREFRINKGFFKPTATLKAVDGVSLRLMRGETLGLVGESGCGKSTLAK
LLLGLLAPTSGDVLINGKHLAATDRKAMARHIQPIFQDPYSSLNPRKTLREIITLPLIVH
DIGSPAERRKKTEAMLDVVGLPKRVIDSYPSQLSGGQRQRVAIARALIMRPDVLICDEPT
SALDVSVQAQILNLLQDLKREFGLTYLLISHNLAVIEHLADRVAVMYLGRIVEERTRESL
FAKPGHPYTRALLDSVLTPDPRLGIPEIGLHGTFPNPMSPPSGCAFHPRCPSCFAPCKTA
YPANDPIIGGNVRCHLHDSPAQTLELVHS
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory