Comparing RR42_RS14625 FitnessBrowser__Cup4G11:RR42_RS14625 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4mynA Crystal structure of trypanosoma cruzi formiminoglutamase n114h variant with mn2+2 (see paper)
31% identity, 94% coverage: 20:311/312 of query aligns to 2:291/298 of 4mynA
3m1rD The crystal structure of formimidoylglutamase from bacillus subtilis subsp. Subtilis str. 168
24% identity, 92% coverage: 20:306/312 of query aligns to 21:308/321 of 3m1rD
3lhlA Crystal structure of a putative agmatinase from clostridium difficile
24% identity, 82% coverage: 56:310/312 of query aligns to 20:267/276 of 3lhlA
3pzlB The crystal structure of agmatine ureohydrolase of thermoplasma volcanium
26% identity, 80% coverage: 57:306/312 of query aligns to 39:278/293 of 3pzlB
6dktA Crystal structure of arginase from bacillus subtilis
26% identity, 82% coverage: 57:311/312 of query aligns to 16:278/283 of 6dktA
6nfpD 1.7 angstrom resolution crystal structure of arginase from bacillus subtilis subsp. Subtilis str. 168
26% identity, 82% coverage: 57:311/312 of query aligns to 19:284/289 of 6nfpD
6dktE Crystal structure of arginase from bacillus subtilis
25% identity, 82% coverage: 57:311/312 of query aligns to 16:263/268 of 6dktE
7esrA Crystal structure of synechocystis sp pcc6803 guanidinium hydrolase (r32) (see paper)
25% identity, 82% coverage: 57:312/312 of query aligns to 91:352/378 of 7esrA
3nioA Crystal structure of pseudomonas aeruginosa guanidinobutyrase (see paper)
26% identity, 82% coverage: 57:311/312 of query aligns to 51:307/316 of 3nioA
Q9I3S3 Guanidinobutyrase; EC 3.5.3.7 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
26% identity, 82% coverage: 57:311/312 of query aligns to 54:310/319 of Q9I3S3
2ef5A Crystal structure of the arginase from thermus thermophilus
29% identity, 74% coverage: 81:311/312 of query aligns to 36:268/273 of 2ef5A
Sites not aligning to the query:
1cevA Arginase from bacillus caldovelox, native structure at ph 5.6 (see paper)
26% identity, 76% coverage: 71:306/312 of query aligns to 46:289/299 of 1cevA
P53608 Arginase; EC 3.5.3.1 from Bacillus caldovelox (see paper)
26% identity, 76% coverage: 71:306/312 of query aligns to 46:289/299 of P53608
5cevA Arginase from bacillus caldevelox, l-lysine complex (see paper)
26% identity, 76% coverage: 71:306/312 of query aligns to 45:288/298 of 5cevA
4cevA Arginase from bacillus caldevelox, l-ornithine complex (see paper)
26% identity, 76% coverage: 71:306/312 of query aligns to 45:288/298 of 4cevA
3cevA Arginase from bacillus caldevelox, complexed with l-arginine (see paper)
26% identity, 76% coverage: 71:306/312 of query aligns to 45:288/298 of 3cevA
Sites not aligning to the query:
2cevB Arginase from bacillus caldevelox, native structure at ph 8.5 (see paper)
26% identity, 76% coverage: 71:306/312 of query aligns to 45:288/298 of 2cevB
1wogA Crystal structure of agmatinase reveals structural conservation and inhibition mechanism of the ureohydrolase superfamily (see paper)
26% identity, 82% coverage: 57:311/312 of query aligns to 43:295/303 of 1wogA
P46637 Arginase 1, mitochondrial; Agmatinase ARGAH1; Arginine amidohydrolase 1; AtARGAH1; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
29% identity, 63% coverage: 116:312/312 of query aligns to 154:338/342 of P46637
Sites not aligning to the query:
6vsuE Arginase from arabidopsis thaliana in complex with ornithine (see paper)
29% identity, 63% coverage: 116:312/312 of query aligns to 130:314/318 of 6vsuE
>RR42_RS14625 FitnessBrowser__Cup4G11:RR42_RS14625
MAAAPGSIWRGRSDAGELGDTRRLFHVVRAQGAERVPGAPVLLGFCCDAGVLRNLGRPGA
AGGPREIRRALAGIPAHGLAAFHDAGDVVCHDGDLETAQQALATAVAAELAQGAFPLVLG
GGHEIAWGTWQGLRAHLDARGDHGRVLVINLDAHFDLRTGRPGSSGTPFDQIAQACHERG
QRFEYACLGVSRLGNTAALFAHAQALGVHYVEDVQMQERHLDARLAELQGLMDAVDHVYL
TIDLDVLPAAVMPAVSAPAPYGVPLPVVEEVVALVRASGKLRVADLAEFNPLYDRDACGA
RAAARLAYRLMA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory