Comparing RR42_RS16905 FitnessBrowser__Cup4G11:RR42_RS16905 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 11 hits to proteins with known functional sites (download)
Q8U8Z6 Imidazolonepropionase; Imidazolone-5-propanoate hydrolase; Imidazolone-5-propionate hydrolase; EC 3.5.2.7 from Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58)) (see 2 papers)
55% identity, 95% coverage: 10:410/420 of query aligns to 14:419/419 of Q8U8Z6
2puzB Crystal structure of imidazolonepropionase from agrobacterium tumefaciens with bound product n-formimino-l-glutamate (see paper)
55% identity, 95% coverage: 11:407/420 of query aligns to 1:401/404 of 2puzB
2gokA Crystal structure of the imidazolonepropionase from agrobacterium tumefaciens at 1.87 a resolution (see paper)
55% identity, 95% coverage: 11:407/420 of query aligns to 1:401/404 of 2gokA
2q09A Crystal structure of imidazolonepropionase from environmental sample with bound inhibitor 3-(2,5-dioxo-imidazolidin-4-yl)-propionic acid (see paper)
56% identity, 89% coverage: 34:407/420 of query aligns to 28:398/402 of 2q09A
2oofA The crystal structure of 4-imidazolone-5-propanoate amidohydrolase from environmental sample
56% identity, 89% coverage: 34:407/420 of query aligns to 29:399/403 of 2oofA
A0KF84 Imidazolonepropionase; Imidazolone-5-propionate hydrolase; EC 3.5.2.7 from Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049) (see paper)
56% identity, 89% coverage: 34:407/420 of query aligns to 34:406/411 of A0KF84
2bb0A Structure of imidazolonepropionase from bacillus subtilis (see paper)
39% identity, 90% coverage: 30:408/420 of query aligns to 33:409/413 of 2bb0A
P42084 Imidazolonepropionase; Imidazolone-5-propionate hydrolase; EC 3.5.2.7 from Bacillus subtilis (strain 168) (see paper)
39% identity, 90% coverage: 30:408/420 of query aligns to 35:411/421 of P42084
2g3fA Crystal structure of imidazolonepropionase complexed with imidazole-4- acetic acid sodium salt, a substrate homologue (see paper)
39% identity, 90% coverage: 30:408/420 of query aligns to 34:410/414 of 2g3fA
3hpaA Crystal structure of an amidohydrolase gi:44264246 from an evironmental sample of sargasso sea (see paper)
25% identity, 94% coverage: 25:417/420 of query aligns to 16:395/428 of 3hpaA
4f0rA Crystal structure of an adenosine deaminase homolog from chromobacterium violaceum (target nysgrc-019589) bound zn and 5'- methylthioadenosine (unproductive complex)
27% identity, 55% coverage: 176:407/420 of query aligns to 144:405/436 of 4f0rA
Sites not aligning to the query:
>RR42_RS16905 FitnessBrowser__Cup4G11:RR42_RS16905
MSSSTESAKSADGVWHRCHLLPDGDPAKAIRDAALVVQQGRIVWLGMQAELPQAYAALPR
HDAGSAWITPGLVDCHTHLVYGGQRADEFAMRLAGAGYEEIARAGGGIVSTVRATRAADE
DTLFALAAARLAPLLAEGVTTLEIKSGYGLDLASERKQLRVARRLGDAFGVTVHTTFLGA
HALPPEYAGRADDYITLVCETMMPVLADEGLIDAVDAFCESVGFSLAQTERVFQAAERHG
LRVKLHAEQLSNLGGTALAARYRALSADHLEHLDEAGVVAMAGSGTVAVLLPGAYYFLRD
TNLPPIDLLRRHGVPMAISTDHNPGTSPVTSLLLMMNMACTLFRLTVPEVLAGVTTHAAR
ALGAADRHGLLAAGRAADFVLWNVDSPAELAYWFGRNPAAAVVRQGKVYPAATSVQGVRP
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory