Comparing RR42_RS20080 FitnessBrowser__Cup4G11:RR42_RS20080 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4rqoB Crystal structure of l-serine dehydratase from legionella pneumophila (see paper)
54% identity, 100% coverage: 1:458/458 of query aligns to 1:448/448 of 4rqoB
2iafA Crystal structure of a fragment (residues 11 to 161) of l-serine dehydratase from legionella pneumophila
44% identity, 30% coverage: 17:155/458 of query aligns to 1:134/140 of 2iafA
>RR42_RS20080 FitnessBrowser__Cup4G11:RR42_RS20080
MAVSVFDLFKVGIGPSSSHTVGPMRAALMFAQGLARDGLLPQVASVRVELYGSLGATGRG
HGTDKGVILGLLGEAPDTIDPDTIDVRLAALRASRTLSLLGTHPVPFVEKEHIVFYRREA
MAEHPNGMKFHAFNAGGERIREGRYLSVGGGFIITAGAANTHILEADQQLPHPFRSGRAM
LEMAAASKKSIARLMMENECVWRSEAEVNAGLLQIWAVMQACVARGCRTDGELPGPFKVK
RRAHDLFRNLTEHAERALADPLSVIDWVNLYAIAVNEENAAGGRVVTAPTNGAAGIIPAV
LHYYDRFVPGANPQGVIDFLLTAGAIGMLYKLNASISGAEVGCQGEVGVACSMAAGALAA
VMGGTPEQVENAAEIGMEHNLGLTCDPVGGLVQIPCIERNAMASVKAVNAARMALRGDGM
HYVSLDSVIKTMRETGADMKTKYKETARGGLAVNIVEC
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory