SitesBLAST – Find functional sites

 

SitesBLAST

Comparing RR42_RS24425 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 10 hits to proteins with known functional sites (download)

5fglB Co-crystal structure of nicr2_hsp
48% identity, 62% coverage: 9:52/71 of query aligns to 4:47/206 of 5fglB

query
sites
5fglB
I
 
I
L
 
L
S
 
N
S
 
E
A
 
A
M
 
E
R
 
K
W
 
V
F
 
F
A
 
A
R
 
M
R
 
H
G
 
G
F
 
F
D
 
L
G
 
G
A
 
A
S
 
T
V
 
L
T
 
K
Q
 
Q
I
 
I
A
 
A
A
 
Q
D
 
N
A
 
S
G
 
N
V
 
V
P
 
T
Q
 
Q
P
 
A
L
 
L
I
 
I
N
 
T
Y
 
Y
H
 
Y
F
 
Y
G
 
G
T
 
T
K
 
K
L
 
Q
K
 
N
L
 
L
W
 
F

Sites not aligning to the query:

O86312 HTH-type transcriptional regulatory protein RaaS; Regulator of antimicrobial-assisted survival from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
40% identity, 87% coverage: 2:63/71 of query aligns to 5:65/212 of O86312

query
sites
O86312
D
 
D
G
 
L
T
 
T
T
 
A
R
 
H
A
 
A
Q
 
R
I
 
I
L
 
R
S
 
E
S
 
A
A
 
A
M
 
I
R
 
E
W
 
Q
F
 
F
A
 
G
R
 
R
R
 
H
G
 
G
F
 
F
D
 
-
G
 
G
A
 
V
S
 
G
V
 
L
T
 
R
Q
 
A
I
 
I
A
 
A
A
 
E
D
 
A
A
 
A
G
 
G
V
 
V
P
 
S
Q
 
A
P
 
A
L
 
L
I
 
V
N
 
I
Y
 
H
H
 
H
F
 
F
G
 
G
T
 
S
K
 
K
L
 
E
K
 
G
L
 
L
W
 
R
Q
 
K
A
 
A
S
 
C
V
 
D
D
 
D
F
 
F
L
 
V
F
 
A
D
 
E
E
 
E
L
 
I

Sites not aligning to the query:

2uxoB Ttgr in complex with tetracycline (see paper)
42% identity, 80% coverage: 5:61/71 of query aligns to 7:63/205 of 2uxoB

query
sites
2uxoB
T
 
T
R
 
R
A
 
A
Q
 
Q
I
 
I
L
 
I
S
 
E
S
 
A
A
 
A
M
 
E
R
 
R
W
 
A
F
 
F
A
 
Y
R
 
K
R
 
R
G
 
G
F
 
V
D
 
A
G
 
R
A
 
T
S
 
T
V
 
L
T
 
A
Q
 
D
I
 
I
A
 
A
A
 
E
D
 
L
A
 
A
G
 
G
V
 
V
P
 
T
Q
 
R
P
 
G
L
 
A
I
 
I
N
 
Y
Y
 
W
H
 
H
F
 
F
G
 
N
T
 
N
K
 
K
L
 
A
K
 
E
L
 
L
W
 
V
Q
 
Q
A
 
A
S
 
L
V
 
L
D
 
D
F
 
S
L
|
L
F
 
H
D
 
E

Sites not aligning to the query:

2uxuA Ttgr in complex with naringenin (see paper)
42% identity, 80% coverage: 5:61/71 of query aligns to 8:64/206 of 2uxuA

query
sites
2uxuA
T
 
T
R
 
R
A
 
A
Q
 
Q
I
 
I
L
 
I
S
 
E
S
 
A
A
 
A
M
 
E
R
 
R
W
 
A
F
 
F
A
 
Y
R
 
K
R
 
R
G
 
G
F
 
V
D
 
A
G
 
R
A
 
T
S
 
T
V
 
L
T
 
A
Q
 
D
I
 
I
A
 
A
A
 
E
D
 
L
A
 
A
G
 
G
V
 
V
P
 
T
Q
 
R
P
 
G
L
 
A
I
 
I
N
 
Y
Y
 
W
H
 
H
F
 
F
G
 
N
T
 
N
K
 
K
L
 
A
K
 
E
L
 
L
W
 
V
Q
 
Q
A
 
A
S
 
L
V
 
L
D
 
D
F
 
S
L
 
L
F
 
H
D
 
E

Sites not aligning to the query:

2uxpA Ttgr in complex chloramphenicol (see paper)
42% identity, 80% coverage: 5:61/71 of query aligns to 8:64/206 of 2uxpA

query
sites
2uxpA
T
 
T
R
 
R
A
 
A
Q
 
Q
I
 
I
L
 
I
S
 
E
S
 
A
A
 
A
M
 
E
R
 
R
W
 
A
F
 
F
A
 
Y
R
 
K
R
 
R
G
 
G
F
 
V
D
 
A
G
 
R
A
 
T
S
 
T
V
 
L
T
 
A
Q
 
D
I
 
I
A
 
A
A
 
E
D
 
L
A
 
A
G
 
G
V
 
V
P
 
T
Q
 
R
P
 
G
L
 
A
I
 
I
N
 
Y
Y
 
W
H
 
H
F
 
F
G
 
N
T
 
N
K
 
K
L
 
A
K
 
E
L
 
L
W
 
V
Q
 
Q
A
 
A
S
 
L
V
 
L
D
 
D
F
 
S
L
 
L
F
 
H
D
 
E

Sites not aligning to the query:

2uxiA Phloretin in complex with ttgr (see paper)
42% identity, 80% coverage: 5:61/71 of query aligns to 8:64/206 of 2uxiA

query
sites
2uxiA
T
 
T
R
 
R
A
 
A
Q
 
Q
I
 
I
L
 
I
S
 
E
S
 
A
A
 
A
M
 
E
R
 
R
W
 
A
F
 
F
A
 
Y
R
 
K
R
 
R
G
 
G
F
 
V
D
 
A
G
 
R
A
 
T
S
 
T
V
 
L
T
 
A
Q
 
D
I
 
I
A
 
A
A
 
E
D
 
L
A
 
A
G
 
G
V
 
V
P
 
T
Q
 
R
P
 
G
L
 
A
I
 
I
N
 
Y
Y
 
W
H
 
H
F
 
F
G
 
N
T
 
N
K
 
K
L
 
A
K
 
E
L
 
L
W
 
V
Q
 
Q
A
 
A
S
 
L
V
 
L
D
 
D
F
 
S
L
 
L
F
 
H
D
 
E

Sites not aligning to the query:

2uxhA Ttgr in complex with quercetin (see paper)
42% identity, 80% coverage: 5:61/71 of query aligns to 8:64/206 of 2uxhA

query
sites
2uxhA
T
 
T
R
 
R
A
 
A
Q
 
Q
I
 
I
L
 
I
S
 
E
S
 
A
A
 
A
M
 
E
R
 
R
W
 
A
F
 
F
A
 
Y
R
 
K
R
 
R
G
 
G
F
 
V
D
 
A
G
 
R
A
 
T
S
 
T
V
 
L
T
 
A
Q
 
D
I
 
I
A
 
A
A
 
E
D
 
L
A
 
A
G
 
G
V
 
V
P
 
T
Q
 
R
P
 
G
L
 
A
I
 
I
N
 
Y
Y
 
W
H
 
H
F
 
F
G
 
N
T
 
N
K
 
K
L
 
A
K
 
E
L
 
L
W
 
V
Q
 
Q
A
 
A
S
 
L
V
 
L
D
 
D
F
 
S
L
 
L
F
 
H
D
 
E

Sites not aligning to the query:

7k1cB Ttgr in complex with resveratrol (see paper)
42% identity, 80% coverage: 5:61/71 of query aligns to 10:66/208 of 7k1cB

query
sites
7k1cB
T
 
T
R
 
R
A
 
A
Q
 
Q
I
 
I
L
 
I
S
 
E
S
 
A
A
 
A
M
 
E
R
 
R
W
 
A
F
 
F
A
 
Y
R
 
K
R
 
R
G
 
G
F
 
V
D
 
A
G
 
R
A
 
T
S
 
T
V
 
L
T
 
A
Q
 
D
I
 
I
A
 
A
A
 
E
D
 
L
A
 
A
G
 
G
V
 
V
P
 
T
Q
 
R
P
 
G
L
 
A
I
 
I
N
 
Y
Y
 
W
H
 
H
F
 
F
G
 
N
T
 
N
K
 
K
L
 
A
K
 
E
L
 
L
W
 
V
Q
 
Q
A
 
A
S
 
L
V
 
L
D
 
D
F
 
S
L
 
L
F
 
H
D
 
E

Sites not aligning to the query:

8v90A Ttgr variant 3a7 with naltrexone
42% identity, 80% coverage: 5:61/71 of query aligns to 8:64/206 of 8v90A

query
sites
8v90A
T
 
T
R
 
R
A
 
A
Q
 
Q
I
 
I
L
 
I
S
 
E
S
 
A
A
 
A
M
 
E
R
 
R
W
 
A
F
 
F
A
x
Y
R
 
K
R
 
R
G
 
G
F
 
V
D
 
A
G
 
R
A
 
T
S
 
T
V
 
L
T
 
A
Q
 
D
I
 
I
A
 
A
A
 
E
D
 
L
A
 
A
G
 
G
V
 
V
P
 
T
Q
 
R
P
 
G
L
 
A
I
 
I
N
 
Y
Y
 
W
H
 
H
F
 
F
G
 
N
T
 
N
K
 
K
L
 
A
K
 
E
L
 
L
W
 
V
Q
 
Q
A
 
A
S
 
L
V
 
L
D
 
D
F
 
S
L
 
L
F
 
H
D
 
E

Sites not aligning to the query:

6srnA Structural basis for control of antibiotic production by bacterial hormones (see paper)
43% identity, 75% coverage: 5:57/71 of query aligns to 3:55/187 of 6srnA

query
sites
6srnA
T
 
T
R
 
R
A
 
A
Q
 
Q
I
 
I
L
 
L
S
 
E
S
 
A
A
 
A
M
 
S
R
 
E
W
 
I
F
 
F
A
 
A
R
 
S
R
 
R
G
 
G
F
 
Y
D
 
R
G
 
G
A
 
A
S
 
S
V
 
V
T
 
K
Q
 
D
I
 
V
A
 
A
A
 
E
D
 
R
A
 
V
G
 
G
V
 
M
P
 
T
Q
 
K
P
 
G
L
 
A
I
 
V
N
 
Y
Y
 
F
H
 
H
F
 
F
G
 
P
T
 
S
K
 
K
L
 
E
K
 
S
L
 
L
W
 
A
Q
 
I
A
 
A
S
 
V
V
 
V
D
 
E

Sites not aligning to the query:

Query Sequence

>RR42_RS24425
MDGTTRAQILSSAMRWFARRGFDGASVTQIAADAGVPQPLINYHFGTKLKLWQASVDFLF
DELIKDLAIFS

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory