Comparing RR42_RS28800 FitnessBrowser__Cup4G11:RR42_RS28800 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 11 hits to proteins with known functional sites (download)
5kvuA Crystal structure of isocitrate dehydrogenase-2 in complex with NADP(+) from mycobacterium tuberculosis
81% identity, 99% coverage: 5:743/745 of query aligns to 1:738/738 of 5kvuA
5z16B A novel dimeric isocitrate dehydrogenase from acinetobacter baumannii
80% identity, 99% coverage: 7:744/745 of query aligns to 2:739/739 of 5z16B
4zdaA Crystal structure of isocitrate dehydrogenase in complex with isocitrate and mn from m. Smegmatis
79% identity, 99% coverage: 6:740/745 of query aligns to 1:735/735 of 4zdaA
6g3uA Structure of pseudomonas aeruginosa isocitrate dehydrogenase, idh (see paper)
70% identity, 98% coverage: 8:740/745 of query aligns to 3:733/737 of 6g3uA
1j1wA Crystal structure of the monomeric isocitrate dehydrogenase in complex with NADP+ (see paper)
65% identity, 99% coverage: 6:741/745 of query aligns to 2:736/738 of 1j1wA
1itwA Crystal structure of the monomeric isocitrate dehydrogenase in complex with isocitrate and mn (see paper)
65% identity, 99% coverage: 6:741/745 of query aligns to 3:737/740 of 1itwA
P16100 Isocitrate dehydrogenase [NADP]; IDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Azotobacter vinelandii (see 2 papers)
64% identity, 99% coverage: 1:741/745 of query aligns to 1:738/741 of P16100
P50216 Isocitrate dehydrogenase [NADP]; IDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) (see paper)
58% identity, 99% coverage: 8:744/745 of query aligns to 4:737/738 of P50216
3mbcA Crystal structure of monomeric isocitrate dehydrogenase from corynebacterium glutamicum in complex with NADP (see paper)
58% identity, 99% coverage: 8:743/745 of query aligns to 3:735/735 of 3mbcA
2b0tA Structure of monomeric NADP isocitrate dehydrogenase (see paper)
58% identity, 99% coverage: 8:743/745 of query aligns to 3:735/735 of 2b0tA
7y1uA Crystal structure of isocitrate dehydrogenase from campylobacter corcagiensis
52% identity, 98% coverage: 8:737/745 of query aligns to 2:719/723 of 7y1uA
>RR42_RS28800 FitnessBrowser__Cup4G11:RR42_RS28800
MSTQQPTIIYTLTDEAPLLATSAFLPIIRTFTAPAGINVTTSDISVAGRILGEFPEFLTE
AQRVPDNLAELGRLTLQPDTNIIKLPNISASVHQLVSAIKELQAKGYKVPDFPEDPKTDA
EKAIRQRYSKCLGSAVNPVLREGNSDRRAPAAVKNYARKNPHSMGEWSMASRTHVAHMKH
GDFYHGEKSMTLDRARDVKMELVTKSGKTIVLKPKVSLLDGEIIDSMFMSKKALCDFYEE
QMEDARKTGVMLSLHVKATMMKVSHPIVFGHAVKIFYKEAFEKHGKLFDELGVNVNNGLV
NLYDKLESLPSSKREEIIRDMHACHEHRPELAMVDSAKGISNLHAPNDVIVDASMPAMIR
IGGKMWGADGRPKDTKAVIPESTFARIYQEIINFCKTNGNFDPVTMGTVPNVGLMAQQAE
EYGSHDKTFEVPEAGEARIVDIATGEVLLVQNVEEGDIWRMCQVKDAPIRDWVKLAVTRA
RNSGMPAIFWLDPYRPHEAEMIKKVETYLKDHDTTGLDIQIMSQVRAMRYTLERVIRGLD
TISVTGNILRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMYETGAGGSAPKHVKQLVEEN
HLRWDSLGEFLALAVSLEELGIKTSNEKAKVLAKTLDAATGKLLDNNKNPSPKTGQLDNR
GSQFYLAMYWAQELAAQTDDAALAAQFAPLAKQLTDNEQVIVGELSAVQGKQADIGGYYK
PDFAKLDIVMRPSKTLNAALAAVKA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory