SitesBLAST – Find functional sites

 

SitesBLAST

Comparing SM_b21015 FitnessBrowser__Smeli:SM_b21015 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

3m4rA Structure of the n-terminal class ii aldolase domain of a conserved protein from thermoplasma acidophilum
40% identity, 46% coverage: 30:221/416 of query aligns to 19:210/213 of 3m4rA

query
sites
3m4rA
I
 
V
Y
 
Y
T
 
G
S
 
S
R
 
R
L
 
L
I
 
I
G
 
G
S
 
S
D
 
D
P
 
P
D
 
D
L
 
L
V
 
V
L
 
L
H
 
-
G
 
G
G
 
G
G
 
G
N
 
N
T
 
T
S
 
S
V
 
V
K
 
K
I
 
T
-
 
T
-
 
E
R
 
R
S
 
D
D
 
H
E
 
A
G
 
G
E
 
R
-
 
I
-
 
I
Q
 
S
L
 
V
M
 
L
H
 
R
I
 
V
K
 
K
G
 
N
S
 
S
G
 
G
W
 
S
D
 
N
L
 
L
D
 
G
T
 
T
I
 
I
E
 
D
A
 
S
P
 
R
G
 
G
L
 
F
P
 
T
A
 
G
V
 
I
R
 
R
L
 
M
A
 
D
S
 
D
L
 
A
L
 
L
E
 
A
A
 
A
R
 
A
N
 
K
T
 
I
P
 
D
K
 
K
L
 
M
S
 
T
D
 
D
P
 
E
D
 
A
M
 
M
V
 
V
L
 
D
L
 
Y
L
 
L
R
 
K
A
 
K
S
 
S
L
 
M
I
 
V
E
 
N
K
 
P
D
 
S
A
 
E
P
 
P
N
 
S
P
 
P
S
 
S
V
 
V
E
|
E
A
 
T
L
 
F
L
 
L
H
 
H
A
 
A
F
 
F
I
 
L
P
 
P
F
 
Y
D
 
K
Y
 
F
V
 
V
D
 
M
H
|
H
T
 
S
H
|
H
A
 
A
T
 
D
A
 
A
V
 
I
L
 
L
A
 
S
L
 
I
A
 
T
D
 
N
Q
 
T
P
 
D
N
 
L
M
 
P
R
 
S
D
 
D
A
 
Q
I
 
I
R
 
A
R
 
K
I
 
I
Y
 
L
G
 
G
D
 
N
R
 
-
L
 
V
A
 
V
Y
 
V
V
 
L
P
 
P
Y
 
Y
V
 
I
M
 
P
P
 
P
G
 
G
F
 
F
D
 
T
L
 
L
S
 
A
I
 
K
A
 
E
A
 
V
D
 
M
R
 
N
I
 
C
Y
 
F
R
 
K
S
 
K
H
 
G
S
 
I
D
 
D
C
 
-
E
 
-
G
 
G
L
 
I
W
 
V
L
 
L
E
 
R
N
 
K
H
|
H
G
 
G
L
 
L
F
 
L
S
 
T
F
 
F
A
 
G
N
 
D
D
 
T
A
 
G
R
 
K
A
 
E
S
 
A
Y
 
Y
D
 
D
L
 
R
M
 
H
I
 
I
E
 
N
F
 
I
V
 
V
T
 
S
L
 
R
A
 
A
E
 
E
Q
 
N

Query Sequence

>SM_b21015 FitnessBrowser__Smeli:SM_b21015
MESRWNDEDAARFVEAARAEGQSEALGLRIYTSRLIGSDPDLVLHGGGNTSVKIRSDEGE
QLMHIKGSGWDLDTIEAPGLPAVRLASLLEARNTPKLSDPDMVLLLRASLIEKDAPNPSV
EALLHAFIPFDYVDHTHATAVLALADQPNMRDAIRRIYGDRLAYVPYVMPGFDLSIAADR
IYRSHSDCEGLWLENHGLFSFANDARASYDLMIEFVTLAEQELARAGVALSGPQPNDGER
DAALAARLEKALMRERSPFAKGVFLDYRSTEAIRELTSKPNVETISLRGTVTPDHVIRIK
PWPMIIGADADEPAIESALAAYADRYRAYFERNATRANEKKRILDVYPRVVLVLGKGMFA
IGANAKAAKIGGDLCEQAARAINAAEAYGCFTPISEADLFDMEYWSLEQAKLKIAV

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory