SitesBLAST – Find functional sites

 

SitesBLAST

Comparing SMa1487 FitnessBrowser__Smeli:SMa1487 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

3m97X Structure of the soluble domain of cytochrome c552 with its flexible linker segment from paracoccus denitrificans (see paper)
48% identity, 86% coverage: 18:122/122 of query aligns to 14:117/118 of 3m97X

query
sites
3m97X
A
 
A
T
 
T
P
 
V
A
 
L
L
 
A
S
 
S
Q
 
A
E
 
D
A
 
P
A
 
A
P
 
A
G
 
G
Q
 
E
K
 
K
L
 
V
F
 
F
Q
 
G
Q
 
-
R
 
K
C
|
C
G
 
K
A
 
A
C
|
C
H
|
H
Q
 
K
L
 
L
E
 
D
T
 
G
P
 
-
R
 
N
N
 
D
G
 
G
V
 
V
G
 
G
P
|
P
H
 
H
L
|
L
L
 
N
G
 
G
V
 
V
V
 
V
G
 
G
R
 
R
T
 
T
A
 
V
G
x
A
S
 
G
V
 
V
D
 
D
G
 
G
F
 
F
R
 
N
Y
|
Y
S
|
S
A
 
D
A
 
P
L
 
M
K
 
K
G
 
A
S
 
H
G
 
G
I
 
G
A
 
D
W
|
W
T
 
T
A
 
P
E
 
E
T
 
A
L
 
L
E
 
Q
T
 
E
F
 
F
L
|
L
S
 
T
N
 
N
P
 
P
A
 
K
A
 
A
M
 
V
V
 
V
R
 
K
G
 
G
T
|
T
R
x
K
M
|
M
A
 
A
-
x
F
Q
 
A
R
 
G
F
 
L
N
 
P
N
 
K
A
 
I
D
 
E
E
 
D
R
 
R
R
 
A
A
 
N
I
x
L
I
 
I
A
 
A
F
 
Y
L
 
L
R
 
E
A
 
G
Q
 
Q

P19974 Cytochrome c 2.1 from Caenorhabditis elegans (see paper)
43% identity, 77% coverage: 29:122/122 of query aligns to 12:106/111 of P19974

query
sites
P19974
G
 
G
Q
 
K
K
 
K
L
 
V
F
 
Y
Q
 
K
Q
 
Q
R
 
R
C
|
C
G
 
L
A
 
Q
C
|
C
H
 
H
Q
 
V
L
 
V
E
 
D
T
 
S
P
 
T
R
 
A
N
 
T
G
 
K
V
 
T
G
 
G
P
 
P
H
 
T
L
 
L
L
 
H
G
 
G
V
 
V
V
 
I
G
 
G
R
 
R
T
 
T
A
 
S
G
 
G
S
 
T
V
 
V
D
 
S
G
 
G
F
 
F
R
 
D
Y
 
Y
S
 
S
A
 
A
A
 
A
L
 
N
K
 
K
G
 
N
S
 
K
G
 
G
I
 
V
A
 
V
W
 
W
T
 
T
A
 
K
E
 
E
T
 
T
L
 
L
E
 
F
T
 
E
F
 
Y
L
 
L
S
 
L
N
 
N
P
 
P
A
 
K
A
 
K
M
 
Y
V
 
I
R
 
P
G
 
G
T
 
T
R
 
K
M
 
M
A
 
V
-
 
F
Q
 
A
R
 
G
F
 
L
N
 
K
N
 
K
A
 
A
D
 
D
E
 
E
R
 
R
R
 
A
A
 
D
I
 
L
I
 
I
A
 
K
F
 
Y
L
 
I
R
 
E
A
 
V
Q
 
E

Sites not aligning to the query:

P00076 Cytochrome c from Euglena gracilis (see paper)
44% identity, 79% coverage: 25:120/122 of query aligns to 2:98/102 of P00076

query
sites
P00076
E
 
D
A
 
A
A
 
E
P
 
R
G
 
G
Q
 
K
K
 
K
L
 
L
F
 
F
Q
 
E
Q
 
S
R
 
R
C
 
A
G
 
A
A
 
Q
C
|
C
H
 
H
Q
 
S
L
 
A
E
 
Q
T
 
K
P
 
G
R
 
V
N
 
N
G
 
S
V
 
T
G
 
G
P
 
P
H
 
S
L
 
L
L
 
W
G
 
G
V
 
V
V
 
Y
G
 
G
R
 
R
T
 
T
A
 
S
G
 
G
S
 
S
V
 
V
D
 
P
G
 
G
F
 
Y
R
 
A
Y
 
Y
S
 
S
A
 
N
A
 
A
L
 
N
K
 
K
G
 
N
S
 
A
G
 
A
I
 
I
A
 
V
W
 
W
T
 
E
A
 
E
E
 
E
T
 
T
L
 
L
E
 
H
T
 
K
F
 
F
L
 
L
S
 
E
N
 
N
P
 
P
A
 
K
A
 
K
M
 
Y
V
 
V
R
 
P
G
 
G
T
 
T
R
 
K
M
 
M
A
 
A
-
 
F
Q
 
A
R
 
G
F
 
I
N
x
K
N
 
A
A
 
K
D
 
K
E
 
D
R
 
R
R
 
Q
A
 
D
I
 
I
I
 
I
A
 
A
F
 
Y
L
 
M
R
 
K

Sites not aligning to the query:

P22342 Cytochrome c from Euglena viridis (Cercaria viridis) (see paper)
43% identity, 79% coverage: 25:120/122 of query aligns to 2:98/102 of P22342

query
sites
P22342
E
 
D
A
 
A
A
 
E
P
 
R
G
 
G
Q
 
K
K
 
K
L
 
L
F
 
F
Q
 
E
Q
 
S
R
 
R
C
 
A
G
 
G
A
 
Q
C
 
C
H
 
H
Q
 
S
L
 
S
E
 
Q
T
 
K
P
 
G
R
 
V
N
 
N
G
 
S
V
 
T
G
 
G
P
 
P
H
 
A
L
 
L
L
 
Y
G
 
G
V
 
V
V
 
Y
G
 
G
R
 
R
T
 
T
A
 
S
G
 
G
S
 
T
V
 
V
D
 
P
G
 
G
F
 
Y
R
 
A
Y
 
Y
S
 
S
A
 
N
A
 
A
L
 
N
K
 
K
G
 
N
S
 
A
G
 
A
I
 
I
A
 
V
W
 
W
T
 
E
A
 
D
E
 
E
T
 
S
L
 
L
E
 
N
T
 
K
F
 
F
L
 
L
S
 
E
N
 
N
P
 
P
A
 
K
A
 
K
M
 
Y
V
 
V
R
 
P
G
 
G
T
 
T
R
 
K
M
 
M
A
 
A
-
 
F
Q
 
A
R
 
G
F
 
I
N
x
K
N
 
A
A
 
K
D
 
K
E
 
D
R
 
R
R
 
L
A
 
D
I
 
I
I
 
I
A
 
A
F
 
Y
L
 
M
R
 
K

Sites not aligning to the query:

P00077 Cytochrome c; Cytochrome c557 from Strigomonas oncopelti (Parasitic flagellate) (Crithidia oncopelti) (see 2 papers)
41% identity, 83% coverage: 20:120/122 of query aligns to 8:110/113 of P00077

query
sites
P00077
P
 
P
A
 
L
L
 
P
S
 
P
Q
 
G
E
 
D
A
 
A
A
 
A
P
 
K
G
 
G
Q
 
E
K
 
K
L
 
I
F
 
F
Q
 
K
Q
 
G
R
 
R
C
 
A
G
 
A
A
 
Q
C
 
C
H
 
H
Q
 
T
-
 
G
L
 
A
E
 
K
T
 
G
P
 
G
R
 
A
N
 
N
G
 
G
V
 
V
G
 
G
P
 
P
H
 
N
L
 
L
L
 
F
G
 
G
V
 
I
V
 
V
G
 
N
R
 
R
T
 
H
A
 
S
G
 
G
S
 
T
V
 
V
D
 
E
G
 
G
F
 
F
R
 
A
Y
 
Y
S
 
S
A
 
K
A
 
A
L
 
N
K
 
A
G
 
D
S
 
S
G
 
G
I
 
V
A
 
V
W
 
W
T
 
T
A
 
P
E
 
E
T
 
V
L
 
L
E
 
D
T
 
V
F
 
Y
L
 
L
S
 
E
N
 
N
P
 
P
A
 
K
A
 
K
M
 
F
V
 
M
R
 
P
G
 
G
T
 
T
R
 
K
M
 
M
A
 
S
-
 
F
Q
 
A
R
 
G
F
 
I
N
 
K
N
 
K
A
 
P
D
 
Q
E
 
E
R
 
R
R
 
A
A
 
D
I
 
L
I
 
I
A
 
A
F
 
Y
L
 
L
R
 
E

Sites not aligning to the query:

P00038 Cytochrome c from Apis mellifera (Honeybee) (see paper)
40% identity, 75% coverage: 29:120/122 of query aligns to 11:104/108 of P00038

query
sites
P00038
G
 
G
Q
 
K
K
 
K
L
 
I
F
 
F
Q
 
V
Q
 
Q
R
 
K
C
|
C
G
 
A
A
 
Q
C
|
C
H
 
H
Q
 
T
L
 
I
E
 
E
T
 
S
P
 
G
-
 
G
R
 
K
N
 
H
G
 
K
V
 
V
G
 
G
P
 
P
H
 
N
L
 
L
L
 
Y
G
 
G
V
 
V
V
 
Y
G
 
G
R
 
R
T
 
K
A
 
T
G
 
G
S
 
Q
V
 
A
D
 
P
G
 
G
F
 
Y
R
 
S
Y
 
Y
S
 
T
A
 
D
A
 
A
L
 
N
K
 
K
G
 
G
S
 
K
G
 
G
I
 
I
A
 
T
W
 
W
T
 
N
A
 
K
E
 
E
T
 
T
L
 
L
E
 
F
T
 
E
F
 
Y
L
 
L
S
 
E
N
 
N
P
 
P
A
 
K
A
 
K
M
 
Y
V
 
I
R
 
P
G
 
G
T
 
T
R
 
K
M
 
M
A
 
V
-
 
F
Q
 
A
R
 
G
F
 
L
N
 
K
N
 
K
A
 
P
D
 
Q
E
 
E
R
 
R
R
 
A
A
 
D
I
 
L
I
 
I
A
 
A
F
 
Y
L
 
I
R
 
E

Sites not aligning to the query:

2yk3A Crithidia fasciculata cytochromE C (see paper)
40% identity, 83% coverage: 20:120/122 of query aligns to 4:106/110 of 2yk3A

query
sites
2yk3A
P
 
P
A
 
L
L
 
P
S
 
P
Q
 
G
E
 
D
A
 
A
A
 
A
P
 
R
G
 
G
Q
 
E
K
 
K
L
 
L
F
 
F
Q
 
K
Q
 
G
R
|
R
C
x
A
G
 
A
A
 
Q
C
|
C
H
|
H
Q
 
T
L
 
A
-
 
N
E
 
Q
T
 
G
P
 
G
R
 
A
N
 
N
G
 
G
V
|
V
G
|
G
P
 
P
H
 
N
L
 
L
L
 
Y
G
 
G
V
x
L
V
 
V
G
 
G
R
 
R
T
 
H
A
x
S
G
|
G
S
 
T
V
x
I
D
 
E
G
 
G
F
x
Y
R
 
A
Y
|
Y
S
|
S
A
 
K
A
 
A
L
x
N
K
 
A
G
 
E
S
 
S
G
 
G
I
 
V
A
 
V
W
|
W
T
 
T
A
 
P
E
 
D
T
 
V
L
 
L
E
 
D
T
 
V
F
x
Y
L
|
L
S
 
E
N
 
N
P
 
P
A
 
K
A
 
K
M
 
F
V
 
M
R
 
P
G
 
G
T
|
T
R
x
K
M
|
M
A
x
S
-
x
F
Q
 
A
R
 
G
F
 
M
N
 
K
N
 
K
A
 
P
D
 
Q
E
 
E
R
 
R
R
 
A
A
 
D
I
 
V
I
 
I
A
 
A
F
 
Y
L
 
L
R
 
E

P00078 Cytochrome c; Cytochrome c555 from Crithidia fasciculata (see paper)
40% identity, 83% coverage: 20:120/122 of query aligns to 8:110/114 of P00078

query
sites
P00078
P
 
P
A
 
L
L
 
P
S
 
P
Q
 
G
E
 
D
A
 
A
A
 
A
P
 
R
G
 
G
Q
 
E
K
 
K
L
 
L
F
 
F
Q
 
K
Q
 
G
R
 
R
C
 
A
G
 
A
A
 
Q
C
 
C
H
 
H
Q
 
T
L
 
A
-
 
N
E
 
Q
T
 
G
P
 
G
R
 
A
N
 
N
G
 
G
V
 
V
G
 
G
P
 
P
H
 
N
L
 
L
L
 
Y
G
 
G
V
 
L
V
 
V
G
 
G
R
 
R
T
 
H
A
 
S
G
 
G
S
 
T
V
 
I
D
 
E
G
 
G
F
 
Y
R
 
A
Y
 
Y
S
 
S
A
 
K
A
 
A
L
 
N
K
 
A
G
 
E
S
 
S
G
 
G
I
 
V
A
 
V
W
 
W
T
 
T
A
 
P
E
 
D
T
 
V
L
 
L
E
 
D
T
 
V
F
 
Y
L
 
L
S
 
E
N
 
N
P
 
P
A
x
K
A
 
K
M
 
F
V
 
M
R
 
P
G
 
G
T
 
T
R
 
K
M
 
M
A
 
S
-
 
F
Q
 
A
R
 
G
F
 
M
N
 
K
N
 
K
A
 
P
D
 
Q
E
 
E
R
 
R
R
 
A
A
 
D
I
 
V
I
 
I
A
 
A
F
 
Y
L
 
L
R
 
E

Sites not aligning to the query:

4dy9A Leishmania major peroxidase is a cytochromE C peroxidase (see paper)
43% identity, 75% coverage: 29:120/122 of query aligns to 12:105/108 of 4dy9A

query
sites
4dy9A
G
 
G
Q
 
E
K
 
K
L
 
L
F
 
F
Q
 
K
Q
 
G
R
 
R
C
x
A
G
 
A
A
 
Q
C
|
C
H
|
H
Q
 
T
-
 
A
L
 
T
E
 
K
T
 
G
P
 
G
R
 
S
N
 
N
G
 
G
V
 
V
G
 
G
P
|
P
H
 
N
L
|
L
L
 
F
G
 
G
V
x
I
V
 
V
G
 
N
R
 
R
T
 
P
A
x
S
G
|
G
S
 
K
V
 
V
D
 
E
G
 
G
F
 
F
R
 
T
Y
|
Y
S
|
S
A
 
K
A
 
A
L
x
N
K
 
A
G
 
E
S
 
S
G
 
G
I
 
V
A
 
I
W
|
W
T
 
T
A
 
P
E
 
E
T
 
V
L
 
L
E
 
D
T
 
V
F
 
Y
L
|
L
S
 
E
N
 
N
P
 
P
A
 
K
A
 
K
M
 
F
V
 
M
R
 
P
G
 
G
T
|
T
R
x
K
M
|
M
A
 
S
-
x
F
Q
 
A
R
 
G
F
 
I
N
 
K
N
 
K
A
 
P
D
 
Q
E
 
E
R
 
R
R
 
A
A
 
D
I
 
V
I
 
I
A
 
A
F
 
Y
L
 
L
R
 
E

4gedB Crystal structure of the leishmania major peroxidase-cytochromE C complex (see paper)
43% identity, 75% coverage: 29:120/122 of query aligns to 6:99/102 of 4gedB

query
sites
4gedB
G
 
G
Q
 
E
K
 
K
L
 
L
F
 
F
Q
 
K
Q
 
G
R
 
R
C
x
A
G
 
A
A
 
Q
C
|
C
H
|
H
Q
 
T
-
 
A
L
 
T
E
 
K
T
 
G
P
 
G
R
 
S
N
 
N
G
 
G
V
 
V
G
 
G
P
|
P
H
 
N
L
|
L
L
 
F
G
 
G
V
x
I
V
 
V
G
 
N
R
 
R
T
 
P
A
x
S
G
|
G
S
 
K
V
 
V
D
 
E
G
 
G
F
 
F
R
 
T
Y
|
Y
S
|
S
A
 
K
A
 
A
L
x
N
K
 
A
G
 
E
S
 
S
G
 
G
I
 
V
A
 
I
W
|
W
T
 
T
A
 
P
E
 
E
T
 
V
L
 
L
E
 
D
T
 
V
F
 
Y
L
|
L
S
 
E
N
 
N
P
 
P
A
 
K
A
 
K
M
 
F
V
 
M
R
 
P
G
 
G
T
|
T
R
x
K
M
|
M
A
x
S
-
x
F
Q
 
A
R
 
G
F
 
I
N
 
K
N
 
K
A
 
P
D
 
Q
E
 
E
R
 
R
R
 
A
A
 
D
I
x
V
I
 
I
A
 
A
F
 
Y
L
 
L
R
 
E

P00037 Cytochrome c from Samia cynthia (Ailanthus silkmoth) (Phalaena cynthia) (see paper)
42% identity, 78% coverage: 26:120/122 of query aligns to 8:104/108 of P00037

query
sites
P00037
A
 
A
A
 
E
P
 
N
G
 
G
Q
 
K
K
 
K
L
 
I
F
 
F
Q
 
V
Q
 
Q
R
 
R
C
|
C
G
 
A
A
 
Q
C
|
C
H
 
H
Q
 
T
L
 
V
E
 
E
T
 
A
P
 
G
-
 
G
R
 
K
N
 
H
G
 
K
V
 
V
G
 
G
P
 
P
H
 
N
L
 
L
L
 
H
G
 
G
V
 
F
V
 
Y
G
 
G
R
 
R
T
 
K
A
 
T
G
 
G
S
 
Q
V
 
A
D
 
P
G
 
G
F
 
F
R
 
S
Y
 
Y
S
 
S
A
 
N
A
 
A
L
 
N
K
 
K
G
 
A
S
 
K
G
 
G
I
 
I
A
 
T
W
 
W
T
 
G
A
 
D
E
 
D
T
 
T
L
 
L
E
 
F
T
 
E
F
 
Y
L
 
L
S
 
E
N
 
N
P
 
P
A
 
K
A
 
K
M
 
Y
V
 
I
R
 
P
G
 
G
T
 
T
R
 
K
M
 
M
A
 
V
-
 
F
Q
 
A
R
 
G
F
 
L
N
 
K
N
 
K
A
 
A
D
 
N
E
 
E
R
 
R
R
 
A
A
 
D
I
 
L
I
 
I
A
 
A
F
 
Y
L
 
L
R
 
K

Sites not aligning to the query:

P00047 Cytochrome c from Thermomyces lanuginosus (Humicola lanuginosa) (see paper)
39% identity, 79% coverage: 25:120/122 of query aligns to 10:107/111 of P00047

query
sites
P00047
E
 
D
A
 
A
A
 
S
P
 
K
G
 
G
Q
 
A
K
 
N
L
 
L
F
 
F
Q
 
K
Q
 
T
R
 
R
C
|
C
G
 
A
A
 
Q
C
|
C
H
 
H
Q
 
S
L
 
V
E
 
E
T
 
Q
P
 
G
-
 
G
R
 
A
N
 
N
G
 
K
V
 
I
G
 
G
P
 
P
H
 
N
L
 
L
L
 
H
G
 
G
V
 
L
V
 
F
G
 
G
R
 
R
T
 
K
A
 
T
G
 
G
S
 
S
V
 
V
D
 
E
G
 
G
F
 
Y
R
 
S
Y
 
Y
S
 
T
A
 
D
A
 
A
L
 
N
K
 
K
G
 
Q
S
 
A
G
 
G
I
 
I
A
 
T
W
 
W
T
 
N
A
 
E
E
 
D
T
 
T
L
 
L
E
 
F
T
 
E
F
 
Y
L
 
L
S
 
E
N
 
N
P
 
P
A
x
K
A
 
K
M
 
F
V
 
I
R
 
P
G
 
G
T
 
T
R
 
K
M
 
M
A
 
A
-
 
F
Q
 
G
R
 
G
F
 
L
N
x
K
N
 
K
A
 
N
D
 
K
E
 
D
R
 
R
R
 
N
A
 
D
I
 
L
I
 
I
A
 
T
F
 
Y
L
 
L
R
 
K

P00048 Cytochrome c from Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (see 5 papers)
41% identity, 79% coverage: 25:120/122 of query aligns to 7:104/108 of P00048

query
sites
P00048
E
 
D
A
 
S
A
 
K
P
 
K
G
|
G
Q
 
A
K
 
N
L
 
L
F
 
F
Q
 
K
Q
 
T
R
 
R
C
 
C
G
 
A
A
 
Q
C
 
C
H
 
H
Q
 
T
L
 
L
E
 
E
T
 
E
P
 
G
R
 
G
-
 
G
N
 
N
G
 
K
V
 
I
G
 
G
P
 
P
H
 
A
L
 
L
L
 
H
G
 
G
V
 
L
V
 
F
G
 
G
R
 
R
T
 
K
A
 
T
G
 
G
S
 
S
V
 
V
D
 
D
G
 
G
F
 
Y
R
 
A
Y
 
Y
S
 
T
A
 
D
A
 
A
L
 
N
K
 
K
G
 
Q
S
 
K
G
 
G
I
 
I
A
 
T
W
 
W
T
 
D
A
 
E
E
 
N
T
 
T
L
 
L
E
 
F
T
 
E
F
 
Y
L
 
L
S
 
E
N
 
N
P
 
P
A
x
K
A
 
K
M
 
Y
V
 
I
R
 
P
G
 
G
T
 
T
R
 
K
M
 
M
A
 
A
-
 
F
Q
 
G
R
 
G
F
 
L
N
 
K
N
 
K
A
 
D
D
 
K
E
 
D
R
 
R
R
 
N
A
 
D
I
 
I
I
 
I
A
 
T
F
 
F
L
 
M
R
 
K

Sites not aligning to the query:

P00031 Cytochrome c from Macrobrachium malcolmsonii (Monsoon river-prawn) (Palaemon malcolmsonii) (see paper)
38% identity, 79% coverage: 25:120/122 of query aligns to 3:100/105 of P00031

query
sites
P00031
E
 
D
A
 
V
A
 
E
P
 
K
G
 
G
Q
 
K
K
 
K
L
 
I
F
 
F
Q
 
V
Q
 
Q
R
 
R
C
 
C
G
 
A
A
 
Q
C
 
C
H
 
H
Q
 
S
L
 
A
E
 
Q
T
 
A
P
 
N
-
 
L
R
 
K
N
 
H
G
 
K
V
 
T
G
 
G
P
 
P
H
 
N
L
 
L
L
 
N
G
 
G
V
 
L
V
 
F
G
 
G
R
 
R
T
 
Q
A
 
T
G
 
G
S
 
Q
V
 
A
D
 
S
G
 
G
F
 
Y
R
 
V
Y
 
Y
S
 
T
A
 
D
A
 
A
L
 
N
K
 
K
G
 
A
S
 
K
G
 
G
I
 
I
A
 
T
W
 
W
T
 
Q
A
 
A
E
 
D
T
 
T
L
 
L
E
 
D
T
 
V
F
 
Y
L
 
L
S
 
E
N
 
N
P
 
P
A
 
K
A
 
K
M
 
Y
V
 
I
R
 
P
G
 
G
T
 
T
R
 
K
M
 
M
A
 
V
-
 
F
Q
 
A
R
 
G
F
 
L
N
 
K
N
 
K
A
 
A
D
 
N
E
 
E
R
 
R
R
 
A
A
 
D
I
 
L
I
 
I
A
 
A
F
 
Y
L
 
L
R
 
K

Sites not aligning to the query:

1lfmA Crystal structure of cobalt(iii)-substituted cytochromE C (tuna) (see paper)
36% identity, 80% coverage: 25:121/122 of query aligns to 2:100/103 of 1lfmA

query
sites
1lfmA
E
 
D
A
 
V
A
 
A
P
 
K
G
 
G
Q
 
K
K
 
K
L
 
T
F
 
F
Q
 
V
Q
 
Q
R
 
K
C
|
C
G
 
A
A
 
Q
C
|
C
H
|
H
Q
 
T
L
 
V
E
 
E
T
 
N
P
 
G
-
 
G
R
 
K
N
 
H
G
 
K
V
|
V
G
|
G
P
|
P
H
 
N
L
 
L
L
 
W
G
 
G
V
 
L
V
 
F
G
 
G
R
 
R
T
 
K
A
 
T
G
|
G
S
 
Q
V
 
A
D
 
E
G
 
G
F
 
Y
R
 
S
Y
|
Y
S
x
T
A
 
D
A
 
A
L
x
N
K
 
K
G
 
S
S
 
K
G
 
G
I
 
I
A
 
V
W
|
W
T
 
N
A
 
N
E
 
D
T
 
T
L
 
L
E
 
M
T
 
E
F
x
Y
L
 
L
S
 
E
N
 
N
P
 
P
A
 
K
A
 
K
M
 
Y
V
 
I
R
 
P
G
 
G
T
|
T
R
x
K
M
|
M
A
 
I
-
x
F
Q
 
A
R
 
G
F
 
I
N
 
K
N
 
K
A
 
K
D
 
G
E
 
E
R
 
R
R
 
Q
A
 
D
I
 
L
I
 
V
A
 
A
F
 
Y
L
 
L
R
 
K
A
 
S

1i54A CytochromE C (tuna) 2fe:1zn mixed-metal porphyrins (see paper)
36% identity, 80% coverage: 25:121/122 of query aligns to 2:100/103 of 1i54A

query
sites
1i54A
E
 
D
A
 
V
A
 
A
P
 
K
G
 
G
Q
 
K
K
 
K
L
 
T
F
 
F
Q
 
V
Q
 
Q
R
 
K
C
|
C
G
 
A
A
 
Q
C
|
C
H
|
H
Q
 
T
L
 
V
E
 
E
T
 
N
P
 
G
-
 
G
R
 
K
N
 
H
G
 
K
V
|
V
G
|
G
P
|
P
H
 
N
L
 
L
L
 
W
G
 
G
V
 
L
V
 
F
G
 
G
R
 
R
T
 
K
A
 
T
G
|
G
S
 
Q
V
 
A
D
 
E
G
 
G
F
x
Y
R
 
S
Y
|
Y
S
x
T
A
 
D
A
 
A
L
x
N
K
 
K
G
 
S
S
 
K
G
 
G
I
 
I
A
 
V
W
|
W
T
 
N
A
 
N
E
 
D
T
 
T
L
 
L
E
 
M
T
 
E
F
x
Y
L
|
L
S
 
E
N
 
N
P
 
P
A
 
K
A
 
K
M
 
Y
V
 
I
R
 
P
G
 
G
T
|
T
R
x
K
M
|
M
A
 
I
-
x
F
Q
 
A
R
 
G
F
 
I
N
 
K
N
 
K
A
 
K
D
 
G
E
 
E
R
 
R
R
 
Q
A
 
D
I
 
L
I
 
V
A
 
A
F
 
Y
L
 
L
R
 
K
A
 
S

P00046 Cytochrome c from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
39% identity, 83% coverage: 20:120/122 of query aligns to 2:104/109 of P00046

query
sites
P00046
P
 
P
A
 
Y
L
 
A
S
 
P
Q
 
G
E
 
D
A
 
E
A
 
K
P
 
K
G
 
G
Q
 
A
K
 
S
L
 
L
F
 
F
Q
 
K
Q
 
T
R
 
R
C
 
C
G
 
A
A
 
Q
C
 
C
H
 
H
Q
 
T
L
 
V
E
 
E
T
 
K
P
 
G
-
 
G
R
 
A
N
 
N
G
 
K
V
 
V
G
 
G
P
 
P
H
 
N
L
 
L
L
 
H
G
 
G
V
 
V
V
 
F
G
 
G
R
 
R
T
 
K
A
 
T
G
 
G
S
 
Q
V
 
A
D
 
E
G
 
G
F
 
F
R
 
S
Y
 
Y
S
 
T
A
 
E
A
 
A
L
 
N
K
 
R
G
 
D
S
 
K
G
 
G
I
 
I
A
 
T
W
 
W
T
 
D
A
 
E
E
 
E
T
 
T
L
 
L
E
 
F
T
 
A
F
 
Y
L
 
L
S
 
E
N
 
N
P
 
P
A
x
K
A
 
K
M
 
Y
V
 
I
R
 
P
G
 
G
T
 
T
R
 
K
M
 
M
A
 
A
-
 
F
Q
 
A
R
 
G
F
 
F
N
 
K
N
 
K
A
 
P
D
 
A
E
 
D
R
 
R
R
 
N
A
 
N
I
 
V
I
 
I
A
 
T
F
 
Y
L
 
L
R
 
K

Sites not aligning to the query:

P00027 Cytochrome c from Squalus suckleyi (Puget Sound dogfish) (Spinax suckleyi) (see paper)
38% identity, 79% coverage: 25:120/122 of query aligns to 3:100/105 of P00027

query
sites
P00027
E
 
D
A
 
V
A
 
E
P
 
K
G
 
G
Q
 
K
K
 
K
L
 
V
F
 
F
Q
 
V
Q
 
Q
R
 
K
C
|
C
G
 
A
A
 
Q
C
|
C
H
 
H
Q
 
T
L
 
V
E
 
E
T
 
N
P
 
G
-
 
G
R
 
K
N
 
H
G
 
K
V
 
T
G
 
G
P
 
P
H
 
N
L
 
L
L
 
S
G
 
G
V
 
L
V
 
F
G
 
G
R
 
R
T
 
K
A
 
T
G
 
G
S
 
Q
V
 
A
D
 
Q
G
 
G
F
 
F
R
 
S
Y
 
Y
S
 
T
A
 
D
A
 
A
L
 
N
K
 
K
G
 
S
S
 
K
G
 
G
I
 
I
A
 
T
W
 
W
T
 
Q
A
 
Q
E
 
E
T
 
T
L
 
L
E
 
R
T
 
I
F
 
Y
L
 
L
S
 
E
N
 
N
P
 
P
A
 
K
A
 
K
M
 
Y
V
 
I
R
 
P
G
 
G
T
 
T
R
 
K
M
 
M
A
 
I
-
 
F
Q
 
A
R
 
G
F
 
L
N
 
K
N
 
K
A
 
K
D
 
S
E
 
E
R
 
R
R
 
Q
A
 
D
I
 
L
I
 
I
A
 
A
F
 
Y
L
 
L
R
 
K

Sites not aligning to the query:

P00025 Cytochrome c from Katsuwonus pelamis (Skipjack tuna) (Bonito) (see 2 papers)
36% identity, 80% coverage: 25:121/122 of query aligns to 3:101/104 of P00025

query
sites
P00025
E
 
D
A
 
V
A
 
A
P
 
K
G
 
G
Q
 
K
K
 
K
L
 
T
F
 
F
Q
 
V
Q
 
Q
R
 
K
C
|
C
G
 
A
A
 
Q
C
|
C
H
|
H
Q
 
T
L
 
V
E
 
E
T
 
N
P
 
G
-
 
G
R
 
K
N
 
H
G
 
K
V
 
V
G
 
G
P
 
P
H
 
N
L
 
L
L
 
W
G
 
G
V
 
L
V
 
F
G
 
G
R
 
R
T
 
K
A
 
T
G
 
G
S
 
Q
V
 
A
D
 
E
G
 
G
F
 
Y
R
 
S
Y
 
Y
S
 
T
A
 
D
A
 
A
L
 
N
K
 
K
G
 
S
S
 
K
G
 
G
I
 
I
A
 
V
W
 
W
T
 
N
A
 
E
E
 
N
T
 
T
L
 
L
E
 
M
T
 
E
F
 
Y
L
 
L
S
 
E
N
 
N
P
 
P
A
 
K
A
 
K
M
 
Y
V
 
I
R
 
P
G
 
G
T
 
T
R
 
K
M
|
M
A
 
I
-
 
F
Q
 
A
R
 
G
F
 
I
N
 
K
N
 
K
A
 
K
D
 
G
E
 
E
R
 
R
R
 
Q
A
 
D
I
 
L
I
 
V
A
 
A
F
 
Y
L
 
L
R
 
K
A
 
S

Sites not aligning to the query:

1cycA The crystal structure of bonito (katsuo) ferrocytochromE C at 2.3 angstroms resolution. Ii. Structure and function (see paper)
36% identity, 80% coverage: 25:121/122 of query aligns to 2:100/103 of 1cycA

query
sites
1cycA
E
 
D
A
 
V
A
 
A
P
 
K
G
 
G
Q
 
K
K
 
K
L
 
T
F
 
F
Q
 
V
Q
 
Q
R
x
K
C
|
C
G
 
A
A
 
Q
C
|
C
H
|
H
Q
 
T
L
 
V
E
 
E
T
 
N
P
 
G
-
 
G
R
 
K
N
 
H
G
 
K
V
 
V
G
 
G
P
 
P
H
 
N
L
|
L
L
 
W
G
 
G
V
 
L
V
 
F
G
 
G
R
|
R
T
 
K
A
 
T
G
 
G
S
 
Q
V
 
A
D
 
E
G
 
G
F
x
Y
R
 
S
Y
|
Y
S
 
T
A
 
D
A
 
A
L
x
N
K
 
K
G
 
S
S
 
K
G
 
G
I
 
I
A
 
V
W
 
W
T
 
N
A
 
E
E
 
N
T
 
T
L
 
L
E
 
M
T
 
E
F
 
Y
L
 
L
S
 
E
N
 
N
P
 
P
A
 
K
A
 
K
M
 
Y
V
 
I
R
 
P
G
 
G
T
|
T
R
x
K
M
|
M
A
 
I
-
x
F
Q
 
A
R
 
G
F
 
I
N
 
K
N
 
K
A
 
K
D
 
G
E
 
E
R
 
R
R
 
Q
A
 
D
I
 
L
I
 
V
A
 
A
F
 
Y
L
 
L
R
 
K
A
 
S

Query Sequence

>SMa1487 FitnessBrowser__Smeli:SMa1487
MNKVVIAALVSLAVSGHATPALSQEAAPGQKLFQQRCGACHQLETPRNGVGPHLLGVVGR
TAGSVDGFRYSAALKGSGIAWTAETLETFLSNPAAMVRGTRMAQRFNNADERRAIIAFLR
AQ

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory