SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Synpcc7942_1915 FitnessBrowser__SynE:Synpcc7942_1915 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 5 hits to proteins with known functional sites (download)

1dbfA Chorismate mutase from bacillus subtilis at 1.30 angstrom (see paper)
42% identity, 95% coverage: 5:127/130 of query aligns to 3:125/127 of 1dbfA

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1dbfA
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P19080 Chorismate mutase AroH; CM; EC 5.4.99.5 from Bacillus subtilis (strain 168) (see 2 papers)
41% identity, 95% coverage: 5:127/130 of query aligns to 3:125/127 of P19080

query
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P19080
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3zp7A Arg90cit chorismate mutase of bacillus subtilis in complex with chorismate and prephenate (see paper)
41% identity, 88% coverage: 5:119/130 of query aligns to 3:117/117 of 3zp7A

query
sites
3zp7A
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2chtA Crystal structures of the monofunctional chorismate mutase from bacillus subtilis and its complex with a transition state analog (see paper)
41% identity, 87% coverage: 5:117/130 of query aligns to 2:114/114 of 2chtA

query
sites
2chtA
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1comA The monofunctional chorismate mutase from bacillus subtilis: structure determination of chorismate mutase and its complexes with a transition state analog and prephenate, and implications on the mechanism of enzymatic reaction (see paper)
41% identity, 87% coverage: 5:117/130 of query aligns to 2:114/114 of 1comA

query
sites
1comA
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A
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V
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L

Query Sequence

>Synpcc7942_1915 FitnessBrowser__SynE:Synpcc7942_1915
VSWRVKAIRGATTVRENTAEAMREAVSELLDELERRNPLNPDDIVSLTFSVTRDLDAMFP
AAVARQRAGWQNVPLLDVQQMYVEGSLERCIRLLLHFNCPEDQPPIEHPYLRGAQVLRPD
WVLTESANHR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory