SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_011384085.1 NCBI__GCF_000009985.1:WP_011384085.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

5exdH Crystal structure of oxalate oxidoreductase from moorella thermoacetica bound with carboxy-di-oxido-methyl-tpp (coom-tpp) intermediate (see paper)
27% identity, 86% coverage: 21:184/190 of query aligns to 31:184/291 of 5exdH

query
sites
5exdH
L
 
L
A
 
T
A
 
E
A
 
A
L
 
A
V
 
A
E
 
K
E
 
E
G
 
G
R
 
K
H
 
Y
V
 
V
M
 
Q
A
 
A
I
 
W
P
 
E
A
 
N
F
 
Y
G
 
V
F
 
D
-
 
L
-
 
P
E
 
D
R
 
R
R
 
I
G
 
Y
A
 
V
P
 
P
V
 
V
V
 
R
A
 
A
F
 
Y
L
 
A
R
 
R
L
 
I
S
 
S
D
 
S
T
 
D
V
 
P
I
 
I
-
 
E
-
 
S
R
 
K
R
 
Y
V
 
I
T
 
Y
N
 
E
I
 
N
Y
 
E
S
 
T
P
 
P
D
 
D
I
 
I
V
 
V
V
 
V
V
 
L
I
 
V
D
 
E
P
 
E
T
 
S
V
 
L
V
 
I
R
 
K
A
 
G
V
 
V
D
 
P
V
 
I
Y
 
L
A
 
K
G
 
G
M
 
I
P
 
R
K
 
P
G
 
G
G
 
S
T
 
T
L
 
L
I
 
V
L
 
V
A
 
N
T
 
T
S
 
K
K
 
R
V
 
-
P
 
-
G
 
-
E
 
-
I
 
-
E
 
S
V
 
I
P
 
D
P
 
T
V
 
I
V
 
L
E
 
E
R
 
F
V
 
L
A
 
G
V
 
D
C
 
T
N
 
G
A
 
N
I
 
L
T
 
A
-
 
Q
-
 
I
I
 
V
A
 
T
M
 
V
D
 
D
I
 
A
F
 
N
K
 
S
R
 
M
Q
 
A
I
 
G
T
 
I
N
 
A
T
 
A
I
 
P
M
 
I
L
 
A
G
 
G
A
 
A
F
 
V
A
 
V
K
 
K
A
 
A
T
 
T
G
 
G
L
 
I
V
 
V
S
 
D
V
 
V
D
 
E
S
 
N
L
 
L
E
 
-
K
 
-
A
 
-
L
 
-
E
 
-
E
 
-
T
 
-
H
 
-
F
 
-
R
 
-
D
 
-
A
 
A
G
 
A
L
 
V
K
 
V
Q
 
K
N
 
N
I
 
P
E
 
A
A
 
A
V
 
M
R
 
R
R
 
R
G
 
G
Y
 
Y
A
 
A
E
 
E
T
 
A
Q
 
Q
I
 
V
L
 
R
D
 
Q
L
 
L

Sites not aligning to the query:

Query Sequence

>WP_011384085.1 NCBI__GCF_000009985.1:WP_011384085.1
MHEVRLHGRGGQGAVLASAILAAALVEEGRHVMAIPAFGFERRGAPVVAFLRLSDTVIRR
VTNIYSPDIVVVIDPTVVRAVDVYAGMPKGGTLILATSKVPGEIEVPPVVERVAVCNAIT
IAMDIFKRQITNTIMLGAFAKATGLVSVDSLEKALEETHFRDAGLKQNIEAVRRGYAETQ
ILDLAKEKVA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory