Sites on a Tree

 

Information about 4592619_38_216

Unaligned length: 179

Alignment length: 716

Description in the alignment: single domain, from Planctomyces maris DSM 8797

Link (from the uploaded table)

No known functional residues in BioLiP or SwissProt.

Sequence analysis tools

Find papers: PaperBLAST

Find functional residues: SitesBLAST

Search for conserved domains

Find the best match in UniProt

Compare to protein structures

Predict transmenbrane helices: Phobius

Predict protein localization: PSORTb

Find homologs in fast.genomics

Fitness BLAST: loading...

Sequence

>4592619_38_216
GFKLLFNGKDLSGWQHSGNWKVEDGIISRAGKGGSLVYETEHVPDNFELKFEWKVGEGSN
SGVYYRPGQYEYQILDNNKHVDGKNPRTSAASIYFCLPPSHDATRPVGDWNTGRIVCQGT
VIQHWLNGEKVIDLDYTDPRYAWHVELLANRGGDLADRGAKLSLQDHGDPVWYRGIKMR

Aligned sequence

>4592619_38_216
------------------------------------------------------------
------------------------------------------------------------
----------------------------------GFKLLF-N-GK--DL-SG-------W
Q---HS---------GNW------------------------------------KVED-G
---------------------------IIS-------------------------RAGKG
G-SLVY-----E----TE-HVP-D-NFELKFEWKV---------------GE-GS-----
------------------------NSGVYYRPG---------------------------
--------------QY-EYQILD------NNKHV------------------DGKNPRTS
AASIY----------------------------------------------FCLP-----
---PS--HDATRPVGDWNTGRI--VC-Q-GTV---------------IQ--H-WLN-GEK
VIDLDYTDPRYAWHVELLAN---------------RGGDLADRGAKLSLQ--DHG-----
-------D--------------------PVW--YRGIKM-R---------------

Back to tree

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory