Sites on a Tree

 

Information about 6254960_116_292

Unaligned length: 177

Alignment length: 716

Description in the alignment: single domain, from Chthoniobacter flavus Ellin428

Link (from the uploaded table)

No known functional residues in BioLiP or SwissProt.

Sequence analysis tools

Find papers: PaperBLAST

Find functional residues: SitesBLAST

Search for conserved domains

Find the best match in UniProt

Compare to protein structures

Predict transmenbrane helices: Phobius

Predict protein localization: PSORTb

Find homologs in fast.genomics

Fitness BLAST: loading...

Sequence

>6254960_116_292
GWKLLFDGRSLGGWHLYQQKGEPKTGWHVEQGVLICPKTNGRPNGSGGDLVTDTKFVDFE
FSFEWRISPAGNSGVLYLFDESRAPGGPPMYRGDTGHSPLGFEYQVLDNENHPDGKRGPT
HRAGALYDLNANDKAAPKPVGEWNESRIVLRGKHIEHWLNGVKSAEADLDSAAYREA

Aligned sequence

>6254960_116_292
------------------------------------------------------------
------------------------------------------------------------
----------------------------------GWKLLF-D-GR--SL-GG-------W
H---LYQQKGE--PKTGW------------------------------------HVEQ-G
---------------------------VLIC------------------PKTNGRPNGSG
G-DLVT-----D-----T--KF-V-DFEFSFEWRI---------------SP-AG-----
------------------------NSGVLYLFDESRAP------------------GGPP
MYRGDT---GHSPLGF-EYQVLD------NENHPD-----------------GKRGPTHR
AGALY----------------------------------------------DLNA-----
---ND--KAAPKPVGEWNESRI--VL-R-GKH---------------IE--H-WLN-GVK
SAEADLDSAAY-------------------------------------------------
----------------------------------------REA-------------

Back to tree

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory